Table 1

Main components of the minimalistic quantitative ontology

Entity

has


Annotation

type:STRING, uri:STRING, information:STRING.


Species

name:STRING, internalId:STRING, initialValue:REAL, inPathway:PATHWAY, hooks:SET_OF_ANNOTATIONS.


Kinetic reaction

internalId:STRING, kinetics:FORMULA, kineticParameters:SET_OF_PARAMETERS, inPathway:PATHWAY, reactants:SET_OF_SPECIES, catalysts:SET_OF_SPECIES, products:SET_OF_SPECIES, hooks:SET_OF_ANNOTATIONS.


Parameter

name:STRING, value:REAL.


Pathway

fullname:STRING, hooks:SET_OF_ANNOTATIONS.


Main components of the minimalistic quantitative MIRIAM-aware ontology used to abstract heterogeneous resources associated with biomolecular pathways. The format "attribute:REPRESENTATION" is used.

Umeton et al. BMC Bioinformatics 2012 13(Suppl 4):S6   doi:10.1186/1471-2105-13-S4-S6

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