Table 7

Table of covering fuzzy tandem repeats for non-polyglutammine and non-polyalanine TR.

Gene code

Seq length

Cover

TR-beg

TR-end

FTR-beg

FTR-end

FTR/TR

Cover/Length


FMR1

46137

3415

5061

5171

4983

5168

1.681

0.074

AFF2

16800

595

5021

5062

4958

5429

11.487

0.035

FXN

2465

723

2185

2212

2036

2414

14.000

0.293

DMPK

2465

273

2304

2363

2213

2365

2.576

0.110

ZNF9

23153

5462

16312

16387

16264

17088

10.986

0.235

ATXN10(**)

50000(*)

1301

128559

128628

28543

28654

1.608

0.026

PPP2R2B

5120

703

2088

2366

1842

2363

1.874

0.137

CSTB

9429

3098

4899

4935

4472

5019

15.194

0.328

JPH3

10000(*)

807

35581

35746

35476

35755

1.690

0.080

ATXN8OS

39541

-

37142

37216

-

-

-

-


Table of covering fuzzy tandem repeats for non-polyglutammine and non-polyalanine TR. The table reports: gene code, sequence length, length of the region covered by FTRs, TR expansion begin and TR expansion end, FTR begin and FTR end, ratio of FTR length over TR length, ratio of region covered by FTRs over total sequence length. (*) indicates that a subsequence has been analyzed. (**) indicates two overlapping FTRs.

Pellegrini et al. BMC Bioinformatics 2012 13(Suppl 4):S3   doi:10.1186/1471-2105-13-S4-S3

Open Data