Table 5

Table of fuzzy tandem repeats for PolQ TR.

Gene code

Seq length

Cover

TR-beg

TR-end

FTR-beg

FTR-end

FTR/TR

Cover/Length


ATN1

4367

206

1687

1743

1646

1751

1.875

0.047

HTT

13481

196

197

265

196

367

2.514

0.014

HS-AR

4314

377

1286

1354

1224

1391

2.455

0.087

ATXN1

10636

4237

1560

1646

1500

1718

2.534

0.398

ATXN2

4712

401

658

726

629

748

1.75

0.085

CACNA1A

8641

579

7186

7224

7160

7425

6.973

0.067

ATXN7

7242

443

641

670

576

743

5.758

0.061

TBP

1921

305

451

564

389

636

2.185

0.158

ATXN3

10000(*)

-

943

984

-

-

-

-


Table of fuzzy tandem repeats for PolQ TR. The table reports: gene code, sequence length, length of the region covered by FTRs, TR expansion begin and TR expansion end, FTR begin and FTR end, ratio of FTR length over TR length, ratio of region covered by FTRs over total sequence length. (*) indicates that a subsequence has been analyzed.

Pellegrini et al. BMC Bioinformatics 2012 13(Suppl 4):S3   doi:10.1186/1471-2105-13-S4-S3

Open Data