Table 1

Benchmark results

SENSITIVITY

SPECIFICITY

PPV

MCC


TRAINING SET

0.269

0.984

0.461

0.312

HOLO TEST SET

0.295

0.983

0.413

0.313

APO TEST SET

0.251

0.984

0.372

0.271


Results obtained by PDBinder on the Training Set and Apo/Holo Test Sets. These results were derived by using a single propensity threshold for all the amino acids and applying the spatial clustering with a 10 Angstrom threshold.

Bianchi et al. BMC Bioinformatics 2012 13(Suppl 4):S17   doi:10.1186/1471-2105-13-S4-S17

Open Data