This article is part of the supplement: Italian Society of Bioinformatics (BITS): Annual Meeting 2011
Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities
Centre for Molecular Bioinformatics, Department of Biology, University of Rome "Tor Vergata", Via della Ricerca Scientifica snc, Rome 00133, Italy
BMC Bioinformatics 2012, 13(Suppl 4):S17 doi:10.1186/1471-2105-13-S4-S17Published: 28 March 2012
Additional file 1:
Complete list of triplets along with their potentials. For each triplet with the same amino acid composition we report the total number of matches with the library of binding (BIND) and non-binding (non-bind) residues. In the last column the average PDBinder Propensity Value is calculated for each triplet. For clarity, the row describing the behaviour of the VAL triplet reports the "bind" and "non-bind" data for all triplets containing a Val, an Ala and a Leu in any order and conformation.
Format: XLS Size: 191KB Download file
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