Table 1

Chimpanzee NumtS annotation as reported in the compilation limited to the mitochondrial region 1006-1771 considered in the Primer selection example

#chrom

chromStart

chromEnd

NumtS_ID

score

strand


chrM

318

2790

Ptr_NumtS_376_b1

983

+

chrM

0

2116

Ptr_NumtS_443_b1

951

-

chrM

457

2391

Ptr_NumtS_442_b1

944

-

chrM

0

2512

Ptr_NumtS_379_b2

840

+

chrM

0

2512

Ptr_NumtS_315_b2

838

+

chrM

0

2831

Ptr_NumtS_667_b2

808

-

chrM

835

2448

Ptr_NumtS_127_b1

805

+

chrM

0

2586

Ptr_NumtS_192_b2

794

+

chrM

19

2227

Ptr_NumtS_106_b2

790

-

chrM

703

2783

Ptr_NumtS_371_b1

790

+

chrM

21

5619

Ptr_NumtS_039_b1

786

-

chrM

79

2939

Ptr_NumtS_343_b2

785

-

chrM

0

2249

Ptr_NumtS_604_b1

779

-

chrM

0

2236

Ptr_NumtS_423_b1

775

+

chrM

19

5841

Ptr_NumtS_073_b2

774

+

chrM

4

4498

Ptr_NumtS_335_b2

770

+

chrM

84

9112

Ptr_NumtS_194_b2

770

-

chrM

0

1786

Ptr_NumtS_516_b1

767

-

chrM

0

4603

Ptr_NumtS_088_b1

765

-

chrM

0

4321

Ptr_NumtS_699_b2

758

+

chrM

0

4343

Ptr_NumtS_698_b1

758

-

chrM

0

4343

Ptr_NumtS_685_b1

758

-

chrM

0

4321

Ptr_NumtS_697_b2

757

+

chrM

0

4321

Ptr_NumtS_693_b1

757

-

chrM

0

4343

Ptr_NumtS_700_b1

756

-

chrM

0

4321

Ptr_NumtS_695_b1

756

-

chrM

0

4321

Ptr_NumtS_694_b2

756

+

chrM

0

4343

Ptr_NumtS_692_b2

756

+

chrM

0

4343

Ptr_NumtS_691_b1

756

-

chrM

0

4321

Ptr_NumtS_690_b2

756

+

chrM

0

4343

Ptr_NumtS_687_b1

756

-

chrM

0

4343

Ptr_NumtS_623_b3

755

+

chrM

19

4343

Ptr_NumtS_686_b3

746

+

chrM

19

4343

Ptr_NumtS_696_b1

745

-

chrM

19

4343

Ptr_NumtS_688_b3

745

+

chrM

0

2183

Ptr_NumtS_684_b1

708

+


Calabrese et al. BMC Bioinformatics 2012 13(Suppl 4):S15   doi:10.1186/1471-2105-13-S4-S15

Open Data