Table 1

Contingency table for the ensemble method on all ten chromosomes on the complete data set

Ame.

Con.

Cri.

Cur.

Gui.

Iqu.

Mar.

Nac.

Nan.

Pur.

ci

Recall


Amelonado

68

1

0

0

6

1

4

0

1

13

94

0.72

Contamana

0

63

0

0

0

0

0

3

1

2

69

0.93

Criollo

0

0

39

0

0

0

0

0

0

0

39

1.0

Curaray

0

1

0

114

0

0

0

2

0

0

117

0.97

Guiana

0

0

0

0

58

0

1

0

0

0

59

0.98

Iquitos

0

0

0

0

0

99

2

1

6

9

117

0.85

Marañon

2

1

0

0

0

0

138

0

0

2

143

0.96

Nacional

2

0

1

2

0

1

0

46

0

0

52

0.88

Nanay

0

0

0

0

0

1

0

0

151

0

152

0.99

Purùs

0

1

2

1

0

0

0

7

0

99

110

0.90

pj

72

67

42

117

64

102

145

59

159

125

952

Precision

0.94

0.94

0.93

0.97

0.91

0.97

0.95

0.78

0.95

0.79


The Ensemble method on all ten chromosomes on the complete data set: The 10 × 10 contingency table M for comparing the two partitions is shown above. The reference cluster (ci) along the rows is from [5]. Our computed partition (pj) into 10 groups is along the columns. The F-index for this matrix is 0.92 (where a perfect agreement has a value of 1). Also the precision <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/S19/S17/mathml/M7','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/S19/S17/mathml/M7">View MathML</a> and recall <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/S19/S17/mathml/M8','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/S19/S17/mathml/M8">View MathML</a> for each computed partition is shown along the last row and the last column respectively.

Utro et al. BMC Bioinformatics 2012 13(Suppl 19):S17   doi:10.1186/1471-2105-13-S19-S17

Open Data