Table 1

Signature genes expressed during the day.

Function

Genes


Photosynthesis Cluster

Photosystem II

psbD2, psbO*, psbA1, psbA3, psbF, psbE, psbY, psbA4*, psbA1*, psbA2*, petA*,

Cytochrome Family

psbV, petB*, petJ

Ferredoxin Type

petF1, petF5,

Carbon Fixation

glcD, glcE, glcF, rbcL

Thiamine Biosynthesis

thiC, thiE, thiL, thiOG

Pantothenate Biosynthesis

panB, panD

CoA biosynthesis

ilvB

Fatty Acid Biosynthesis

accD, fabl, fabG

Amino acyl – tRNA biosynthesis

cysS1*, cysS2*, serS*, pheS*, pheT*, thrS1*, thrS2*, proS*

DNA replication

ligA*, polA*, rnhA*

Glyoxylate and dicarboxylate metabolism

purU, glcD, folD, glcE, glcF

Butanoate Metabolism

pdhA, ilvN, ilvB, gabD


* - Genes that are differentially expressed

Nandu et al. BMC Bioinformatics 2012 13(Suppl 18):A9   doi:10.1186/1471-2105-13-S18-A9

Open Data