Table 1

Comparing average number of pathways crossed from the top 20 routes in two methods.

Source

Target

switchmrsd

switchneato

switchmetaroute

switchcmpf1

switchcmpf2


glucose

pyruvate

1.95

1.5

2.95

0

0.85

glutamate

proline

2.45

2.79

0.47

0

0.3

oxaloacetate

malate

1.75

1.33

0.65

0

0.95

glutamate

arginine

2.45

2.05

0.4

0

0

cdp-diacyl-glycerol

cardiolipin

1.75

1.0

1.8

0

0.1

gtp

riboflavin

2

1.78

4.25

0.95

1.05

allantoin

glyoxylate

4.3

2.0

*

1.85

3.15

rhamnose

pyruvate

1.9

0.875

1.1

0.85

1


CMPF1 uses static penalty and CMPF2 uses dynamic penalty. (*denotes no path found by method)

Lim and Wong BMC Bioinformatics 2012 13(Suppl 17):S17   doi:10.1186/1471-2105-13-S17-S17

Open Data