Accuracy of protein quantifications in the study of breast cancer cell lines. X-axis: standardized log-fold change, for the comparison described at the beginning of Section 3, from the naïve analysis, which averages feature intensities in each replicate and uses a two-group t-test. Y-axis: standardized log-fold change from the proposed joint modeling of all conditions. Dashed line: a 45° line.
Clough et al. BMC Bioinformatics 2012 13(Suppl 16):S6 doi:10.1186/1471-2105-13-S16-S6