Table 2

Example of the final output (fragment) table imported in Excel spreadsheet.

gene

am

ar

br

ca

da

ho

lo

mo

ne

sa

tr

ur

sum

Bilateria

Basal


Aqu1.205579

1

1

1

0

0

0

0

1

1

0

1

0

7

TRUE

TRUE

Aqu1.208671

1

0

1

1

0

0

0

0

1

1

0

1

7

TRUE

TRUE

Aqu1.213232

1

1

1

0

0

1

0

0

0

1

1

1

8

TRUE

TRUE

Aqu1.219112

1

0

1

0

0

0

0

0

0

0

0

1

4

TRUE

TRUE

Aqu1.201795

1

0

0

1

0

0

0

0

0

1

0

1

5

TRUE

TRUE

Aqu1.227071

1

0

0

1

0

0

0

0

0

1

0

1

5

TRUE

TRUE


Rows represent selected genes (representative instances of gene families) from all Animal Metagenome pool, columns mark occurrence of the given gene from this pool in a particular genome. The last two columns have logical expressions for such gene occurrence in any Bilateria and in any Basal Metazoa genomes. Abbreviations: am -- Amphimedon; ar -- Arabidopsis; br -- Branchiostoma; ca -- Capsaspora; da -- Daphnia; ho -- Homo; lo -- Lottia; mo -- Monosiga; ne -- Nematostella; pb -- Pleurobrachia; tr -- Trichoplax; ur -- Sea urchin (Strongylocentrotus).

Ptitsyn and Moroz BMC Bioinformatics 2012 13(Suppl 15):S5   doi:10.1186/1471-2105-13-S15-S5

Open Data