Table 1

Gene Ontology enrichment analysis for the gene list in SNDs-related network

GO acc num

GO type

GO term

Query item

Bg item

FDR


GO:0009834

P

secondary cell wall biogenesis

12

18

2.40E-22

GO:0009832

P

plant-type cell wall biogenesis

13

52

8.00E-18

GO:0045449

P

regulation of transcription

17

231

1.70E-14

GO:0007275

P

multicellular organismal development

18

507

3.40E-10

GO:0048856

P

anatomical structure development

13

330

3.50E-08

GO:0044036

P

cell wall macromolecule metabolic process

6

40

1.90E-07

GO:0033692

P

cellular polysaccharide biosynthetic process

7

77

4.30E-07

GO:0009699

P

phenylpropanoid biosynthetic process

5

33

2.50E-06

GO:0010033

P

response to organic substance

9

210

3.40E-06

GO:0006355

P

regulation of transcription, DNA-dependent

14

770

7.20E-05

GO:0006950

P

response to stress

8

456

5.60E-03

GO:0048513

P

organ development

9

639

1.20E-02

GO:0003006

P

reproductive developmental process

9

740

3.10E-02

GO:0006810

P

transport

7

540

5.00E-02

GO:0003700

F

transcription factor activity

27

46

3.00E-49

GO:0016563

F

transcription activator activity

14

24

1.10E-25

GO:0008471

F

laccase activity

6

17

3.00E-09

GO:0016682

F

oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor

6

28

6.70E-08

GO:0016679

F

oxidoreductase activity, acting on diphenols and related substances as donors

6

37

2.70E-07

GO:0046914

F

transition metal ion binding

8

195

3.50E-05

GO:0016757

F

transferase activity, transferring glycosyl groups

11

465

8.90E-05

GO:0016491

F

oxidoreductase activity

11

555

4.00E-04

GO:0043169

F

cation binding

8

306

5.30E-04

GO:0004553

F

hydrolase activity, hydrolyzing O-glycosyl compounds

8

397

2.90E-03

GO:0009055

F

electron carrier activity

5

264

4.10E-02

GO:0005634

C

nucleus

21

212

6.00E-20

GO:0044425

C

membrane part

8

364

3.30E-03

Total

131

31819


P: biological process; F: molecular function; C: cellular component; Bg: background

Yao et al. BMC Bioinformatics 2012 13(Suppl 15):S10   doi:10.1186/1471-2105-13-S15-S10

Open Data