Table 1

DMET SNP distribution

MAF

Shared

RPO

NAR


0

36

107

952

0-0.05

29

124

31

0.05-0.10

27

77

4

0.1-0.2

29

98

5

0.2-0.3

26

97

3

0.3-0.4

25

72

2

0.4-0.5

33

79

4

tot

205

654

1001


Shared: markers genotyped by both DMET and AFFY

RPO (Reference Panel Only): Number of markers that are present in DMET but not in AFFY

NAR (Neither in AFFY nor in Reference Panel): Number of markers not contained in reference panel so these SNPs cannot be directly imputed

For instance, 36 out of 205 shared SNPs, 107 out of 654 RPO SNPs and 952 out of 1001 NAR SNPs resulted to be monomorphic in the sample of 39 individual studied

Mijatovic et al. BMC Bioinformatics 2012 13(Suppl 14):S7   doi:10.1186/1471-2105-13-S14-S7

Open Data