Table 3 

Symbolic representation 

SYMBOL 
MEANING 


D 
The gene expression matrix 
d_{i} 
i^{th}gene in D 
δ 
Signum threshold 
G 
Coexpression network 
V 
Set of vertices in G 
E 
Set of edges in G 
Dist 
Distance matrix 
Dist(d_{i}, d_{j}) 
NMRS distance between genes d_{i}, d_{j}∈D 
Adj 
Adjacency matrix 
Adj(v_{i},v_{j}) 
1 if v_{i} and v_{j} are connected by an edge 0 otherwise 
G^{con} 
Set of connected region 
i^{th} connected region 

Set of vertices in i^{th} connected region 

Set of edges in i^{th} connected region 

Adjacency matrix of the i^{th} connected region 

i^{th} network module 

D^{net} 
Set of network modules obtained from G 
TOM(v_{i},v_{j}) 
Topological Matrix value between vertices v_{i} and v_{j} 
TOM(V_{1}) 
Average TOM of the set of vertices V_{1} 
TOM for i^{th} connected region 

Maximum spanning tree obtained from i^{th} connected region 

Set of edges in 



The table 3 describes the various symbols that is used in ModuleMiner. 

Mahanta et al. BMC Bioinformatics 2012 13(Suppl 13):S4 doi:10.1186/1471210513S13S4 