Table 4

Examples of LSE block duplications in five Streptomyces genomes.

Strains

Block size

Blocks


S. coelicolor

5

(SCO3264-3266, SCO3268-3269)(SCO3986-3984, SCO3982-3981)

(13)a

4

(SCO0216-0219)(SCO4947-4950)(SCO6535-6532)

4

(SCO4525-4528)(SCOSCP1.168-171)

3

(SCO1603-1605)(SCO6400-6402)

2

(SCO0874-0875)(SCO3521-3522)


S. avermitilis

7

(SAV_354-360)(SAV1008-1011, SAV_1013-1015)

(9)

4

(SAV_5337-5340)(SAV7154, SAV7150-7148)

3

(SAV_4095-4097)(SAV_5434-5432)

2

(SAV_1199-1200)(SAV_7454-7453)

2

(SAV_7567-7568)(SAP1p22-21)


S. bingchenggensis

7

(SBI_00573-00577, SBI_00580-00581)(SBI_01909-01913, SBI_01915-01916)

(34)

4

(SBI_02525-02528)(SBI_06733-06736)

4

(SBI_04407-04410)(SBI_04411-04414)

3

(SBI_00377-00379)(SBI_05209-05211)

3

(SBI_00539-00541)(SBI_05182-05184)

2

(SBI_00043-00044)(SBI_07509-07510)(SBI_07927-07928)(SBI_07929-07930)

2

(SBI_02527-02528)(SBI_05511-05510)(SBI_07028-07029)(SBI_07426-07425)

2

(SBI_03820,03822)(SBI_03854-03855)(SBI_07225-07226)

2

(SBI_00058-00059)(SBI_04127-04128)(SBI_05638-05637)

2

(SBI_04480-04481)(SBI_04484-04485)


S. griseus

2

(SGR_443-444)(SGR_6579-6578)

(4)

2

(SGR_454-455)(SGR_4567-4566)

2

(SGR_2409-2410)(SGR_2414-2415)

2

(SGR_2951-2950)(SGR_4306-4305)


S. scabiei (24)

58

(SCAB_21721-21811, 21981-22181, 22201-22281, 22331, 22351-22371, 22391-22401, 22421-22481, 22501, 22531-22561) (SCAB_32241-32331, 32561-32811, 32831-32861, 32991, 33031-33071, 33061- 33071, 33091-33141, 33161-33211)

5

(SCAB_10401-10441)(SCAB_76871-76841)

4

(SCAB_0501-0531)(SCAB_84341-84311)

3

(SCAB_4431-4451)(SCAB_88631-88611)

2

(SCAB_0371-0372)(SCAB_0691-0692)(SCAB_0991-0982)(SCAB_23721-23722) (SCAB_90821-90812)

2

(SCAB_0831-0841)(SCAB_1341-1351)(SCAB_10021-10011)(SCAB_81311-81301)

2

(SCAB_2791-2801)(SCAB_5601-5591)(SCAB_88151-88161)

2

(SCAB_13971-13981)(SCAB_14051-14061)


Block size describes the number of genes in chromosomal or plasmid region that has been duplicated together.

Note: a The number in parenthesis shows the number of duplicated gene blocks in each genome.

Zhou et al. BMC Bioinformatics 2012 13(Suppl 10):S8   doi:10.1186/1471-2105-13-S10-S8

Open Data