Table 3

Examples of contiguous single gene expansions in five Streptomyces genomes.

Stains

Family

Duplications

Function description


S. coelicolor (11)a

strep1777

SCO3466-3467

Transposase

strep2302

SCO2906-2907

PTS transmembrane protein

strep2354

SCO5663-5664

Integral membrane protein

strep5410

SCO7774-7775

Secreted protein

strep6870

SCO7791-7791a

Secreted oxidoreductase

strep8395

SCO0445-0446

Secreted protein


S. avermitilis (5)

strep8429

SAV576-577

TetR family transcriptional regulator

strep2207

SAV5346-5349

Hypothetical protein


S. bingchenggensis (15)

strep1002

14 groups

DNA integration

strep1016

SBI_09333-09334

Transposase

strep2168

SBI_06671-06672

Integral membrane protein

strep2332

SBI_06321-06322

Regulatory protein

strep2438

SBI_04627-04628

Regulatory protein

strep5446

SBI_02610-02611

Cytochrome P450 family protein

strep5448

SBI_02692-02693

Beta galactosidase

strep8479

SBI_01576-01577

Transcriptional regulator, CdaR

strep8554

SBI_09566-09567

NmrA family protein


S. griseus (5)

strep2491

SGR_2433-2434, SGR_5023-5024

Hypothetical protein

strep7090

SGR_4733-4734

Membrane transporter

strep8591

SGR_812-813

FAD-dependent oxidoreductase

strep8821

SGR_605-606

Putative enediyne biosynthesis protein


S. scabiei (10)

strep1854

SCAB_42921-42931

Transposase

strep5499

SCAB_23621-23631

Oxidoreductase

strep5512

SCAB_42581-42591

Integrin-like protein

strep7062

SCAB_69611-69621

Extracellular substrate-binding protein

strep7064

SCAB_48881-48891

GntR family transcriptional regulator

strep8654

SCAB_81001-81011

IclR family transcriptional regulator


Note: a The number in parenthesis shows the number of LSE families with contiguous single gene expansions in each genome.

Zhou et al. BMC Bioinformatics 2012 13(Suppl 10):S8   doi:10.1186/1471-2105-13-S10-S8

Open Data