Table 3

Test results of the single-clone (S) and mixture (M) samples.

ET

KEC

SHORAH_all

SHORAH_1%


MT

FS

RMSE

HD

MT

FS

RMSE

HD

MT

FS

RMSE

HD

MT

FS

RMSE

HD


S1

0

0

0.00

0.00

0

2

1.64

2.50

0

351

29.02

4.83

0

3

19.19

2.00

S2

0

0

0.00

0.00

0

0

0.00

0.00

0

269

30.12

4.44

0

3

21.70

1.00

S3

0

1

1.04

1.00

0

0

0.00

0.00

0

292

23.44

5.31

0

2

14.94

1.00

S4

0

1

0.96

2.00

0

0

0.00

0.00

0

271

44.68

5.37

0

1

37.87

1.00

S5

0

0

0.00

0.00

0

0

0.00

0.00

0

319

9.63

4.47

0

0

0.00

0.00

S6

0

1

0.70

2.00

0

0

0.00

0.00

0

194

18.70

3.90

0

3

12.03

1.00

S7

0

0

0.00

0.00

0

0

0.00

0.00

0

496

21.52

6.70

0

4

9.13

8.50

S8

0

0

0.00

0.00

0

0

0.00

0.00

0

262

14.37

4.58

0

1

3.16

1.00

S9

0

0

0.00

0.00

0

0

0.00

0.00

0

183

6.23

6.97

0

0

0.00

0.00

S10

0

0

0.00

0.00

0

0

0.00

0.00

0

288

7.77

5.11

0

0

0.00

0.00

S11

0

0

0.00

0.00

0

0

0.00

0.00

0

717

24.71

5.03

0

3

9.41

1.00

S12

0

1

0.65

2.00

0

0

0.00

0.00

0

611

25.94

5.52

0

4

10.61

1.50

S13

0

0

0.00

0.00

0

0

0.00

0.00

0

156

5.53

4.93

0

0

0.00

0.00

S14

0

0

0.00

0.00

0

0

0.00

0.00

0

161

6.83

6.60

0

0

0.00

0.00

Mean

0.00

0.29

0.24

0.50

0.00

0.14

0.12

0.18

0.00

326.43

19.18

5.27

0.00

1.71

9.86

1.29

M1

0

0

1.26

0.00

0

0

0.78

0.00

0

320

1.23

4.51

0

0

0.76

0.00

M2

0

0

1.50

0.00

0

0

1.95

0.00

0

738

3.70

4.44

0

2

3.47

1.00

M3

0

0

2.87

0.00

0

0

4.22

0.00

0

638

3.65

4.25

0

1

4.42

1.00

M4

0

0

2.12

0.00

0

0

3.09

0.00

0

577

2.88

5.20

0

1

3.08

1.00

M5

0

0

0.29

0.00

7

0

7.00

0.00

0

214

0.91

7.37

7

0

7.00

0.00

M6

0

0

2.45

0.00

0

0

1.81

0.00

0

394

3.25

4.50

0

0

2.57

0.00

M7

0

0

1.04

0.00

0

0

2.42

0.00

0

499

2.04

5.00

0

0

2.95

0.00

M8

0

0

0.40

0.00

0

0

2.25

0.00

0

336

3.30

5.48

0

1

3.22

1.00

M9

0

0

2.40

0.00

0

0

1.53

0.00

0

643

6.56

4.49

1

4

4.02

1.00

M10

0

0

3.70

0.00

0

0

4.16

0.00

1

637

6.13

5.30

1

2

5.73

1.50

Meann

0.00

0.00

1.80

0.00

0.70

0.00

2.92

0.00

0.10

499.60

3.37

5.05

0.90

1.10

3.72

0.65


MT: Missing true haplotypes; FS: False haplotypes; RMSE: root mean square error; HD: Average Hamming distance, averaged over all false haplotypes. SHORAH_all shows the raw results and SHORAH_1% the results based only on those haplotypes with a frequency > 1%.

Skums et al. BMC Bioinformatics 2012 13(Suppl 10):S6   doi:10.1186/1471-2105-13-S10-S6

Open Data