Table 6

List of top ten scoring modules identified by GSM-CA and their most enriched GO terms for Biological Process

ID

Size of module

Number of proteins enriched the same GO Term

Size of GO Term

Name of GO Term

p-value


1

35

33

221

rRNA processing

1.70e-41

2

42

38

323

ribosome biogenesis

1.61e-39

3

13

13

15

tRNA transcription

1.92e-35

4

19

14

19

mRNA polyadenylation

1.96e-31

5

11

11

12

cyclin catabolic process

8.92e-31

6

14

12

14

polyadenylation-dependent snoRNA 3'-end processing

1.91e-30

7

19

18

93

mitochondrial translation

8.08e-30

8

16

14

29

energy coupled proton transport, down electrochemical gradient

1.33e-29

9

22

14

20

RNA polymerase II transcriptional preinitiation complex assembly

2.70e-29

10

19

18

101

nuclear mRNA splicing, via spliceosome

8.91e-29


He et al. BMC Bioinformatics 2012 13(Suppl 10):S19   doi:10.1186/1471-2105-13-S10-S19

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