Table 1

The groups used to form the plan tree.

Group

Query

Mapping source


G1

Protein(P), hasBibRef(P,BR)

SGD

G2

Protein(P),hasDescription(P,"DNA Topoisomerase III")

SGD

G3

Protein(P), hasSystematicName(P, SN)

Yeastract

G4

Protein(P), RegulatedBy(P, TF)

Yeastract

G5

TranscriptionFactor(TF), hasName(TF, Nt)

Yeastract

G6

TranscriptionFactor(TF), belongsTo(TF,C)

Yeastract

G7

TranscriptionFactor(TF), hasPhosphorylationSite(TF, Ph)

PhosphoGrid

G8

Chromosom(C), hasName(C,"16")

Yeastract

G9

regulatedBy(P,TF)

Yeastract

G10

hasBibRef(P,BR)

SGD

G11

belongsTo(TF,C)

Yeastract

G12

hasPhosphoSite(TF,Ph)

PhosphoGrid

G13

Protein(P)

SGD; Yeastract; PhosphoGrid

G14

TranscriptionFactor(TF)

Yeastract; PhosphoGrid

G15

BibRef(BR)

SGD

G16

Chromosome(C)

Yeastract

G17

PhosphoSite(Ph)

PhosphoGrid


For each group the mapping source is given.

Briache et al. BMC Bioinformatics 2012 13(Suppl 1):S7   doi:10.1186/1471-2105-13-S1-S7

Open Data