This article is part of the supplement: Semantic Web Applications and Tools for Life Sciences (SWAT4LS) 2010

Open Access Research

Gauging triple stores with actual biological data

Vladimir Mironov1, Nirmala Seethappan12, Ward Blondé3, Erick Antezana1, Andrea Splendiani4 and Martin Kuiper1*

Author Affiliations

1 Dept. Biology, Norwegian University for Science and Technology (NTNU), Trondheim, 7491 Norway

2 High Performance Computing, Norwegian University for Science and Technology (NTNU), Trondheim, 7491 Norway

3 Dept. Applied Mathematics, Biometrics and Process Control, Ghent University, Ghent, 9000 Belgium

4 Dept. Biomathematics and Bioinformatics, Rothamsted Research, Harpenden, AL5 2JQ, UK

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BMC Bioinformatics 2012, 13(Suppl 1):S3  doi:10.1186/1471-2105-13-S1-S3

Published: 25 January 2012

Additional files

Additional file 1:

benchmarking results. This file contains the raw and derived data values. There is one sheet with the upload data and one separate sheet for each of the stores with the query response times. Additionally there is a sheet with the aggregated data which were used to generate the tables and figures in the manuscript.

Format: XLS Size: 364KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

SPARQL queries. This file contains the SPARQL code of the 24 queries used for testing the stores.

Format: TXT Size: 17KB Download file

Open Data