Open Access Highly Accessed Software

SparSNP: Fast and memory-efficient analysis of all SNPs for phenotype prediction

Gad Abraham1*, Adam Kowalczyk1, Justin Zobel1 and Michael Inouye23

Author Affiliations

1 NICTA Victoria Research Lab, Department of Computing and Information Systems, The University of Melbourne, Australia

2 Immunology Division, The Walter and Eliza Hall Institute of Medical Research, , Australia

3 Departments of Pathology and of Microbiology & Immunology, The University of Melbourne

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BMC Bioinformatics 2012, 13:88  doi:10.1186/1471-2105-13-88

Published: 10 May 2012

Additional files

Additional file 1:

An example of a SparSNP workflow, covering basic quality control, training the model on discovery data, applying the model to validation data, plotting the results, and post-processing.

Format: PDF Size: 207KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Details of the implementation of SparSNP and other supplementary results.

Format: PDF Size: 232KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

SparSNP v0.89, statically linked version for 64-bit Linux x86-64.

Format: BZ2 Size: 2.9MB Download file

Open Data

Additional file 4:

SparSNP v0.89, version for 64-bit Mac OS X.

Format: BZ2 Size: 304KB Download file

Open Data