Table 8

Matching results for the A_23_P140170 gene expression feature of the TCGA II data set
Gene expression feature to be matched
Chr. Start End
14 38570874 38642188
Matching DNA copy number features
Chr. Start End dist. dist.Any dist.Any overl. over.Any over.Any over.Plus
(< 10 k) (< 100 k) (> 0%) (> 10%)
14 38510003 38510062 x
14 38542068 38542127 x
14 38555801 38555860 x
14 38562310 38562358 x
14 38571564 38571623 x x x x x
14 38581765 38581824 x x x
14 38587626 38587685 x x x
14 38597108 38597167 x x x x
14 38602277 38602335 x x x x
14 38609230 38609289 x x x x x
14 38614898 38614957 x x x x
14 38626492 38626551 x x x
14 38631536 38631595 x x x
14 38639169 38639225 x x x
14 38646487 38646546 x
14 38653819 38653878 x
14 38665516 38665575 x
14 38670657 38670716 x
14 38675867 38675926 x
14 38682480 38682539 x
14 38686855 38686914 x
14 38693139 38693198 x
14 38697285 38697344 x
14 38701438 38701497 x
14 38705250 38705309 x

An ‘x’ denotes that that DNA copy number feature has been selected by the corresponding matching procedure. The dashed lines indicate the boundaries of the gene.

van Wieringen et al.

van Wieringen et al. BMC Bioinformatics 2012 13:80   doi:10.1186/1471-2105-13-80

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