Docking prediction with simulated protein interface predictions. Four other methods are listed to compare with PI-LZerD-2: the base LZerD (LZerD), LZerD with clustering using ciRMSD (LZerD+Clustering), LZerD with one interaction of modified LZerD (PI-LZerD-1), and Simple residue filtering method (post-filtering). The x-axis indicates the ranks in logarithmic scale and the y-axis shows the percentage of cases where correct predictions are ranked equal or better than the corresponding ranks. Left panels, A, C, E, G, I, use the 2.5 Å as threshold for correct predictions, while right panels, B, D, F, H, J, use 4.0 Å as the cutoff for near hit predictions. A &B use the correct protein interface information; C/D use the simulated predictions with 5 residue shifts, E/F, G/H, and I/J use the simulated predictions with 10, 12, and 15 residue shifts, respectively.
Li and Kihara BMC Bioinformatics 2012 13:7 doi:10.1186/1471-2105-13-7