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Open Access Highly Accessed Research article

Protein docking prediction using predicted protein-protein interface

Bin Li1 and Daisuke Kihara123*

Author Affiliations

1 Department of Computer Science, Purdue University, West Lafayette, IN, 47907, USA

2 Department of Biological Science, Purdue University, West Lafayette, IN, 47907, USA

3 Markey Center for Structural Biology, Purdue University, West Lafayette, IN, 47907, USA

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BMC Bioinformatics 2012, 13:7  doi:10.1186/1471-2105-13-7

Published: 10 January 2012

Additional files

Additional file 1:

Supplemental material for "Protein Docking Prediction Using Predicted Protein-Protein Interface". The file contains following five figures. Figure S1. Selecting decoys by the scoring function and/or by the cluster size. Figure S2. The procedure to compute "simulated" incorrect PPI site predictions. Figure S3. Docking prediction results using shifted PPI regions classified by the sensitivity of the PPI predictions. Figure S4. Docking prediction results using shifted PPI regions classified by the fnat of the PPI predictions. Figure S5. Comparison of prediction results using different numbers of decoys for running the second iteration of LZerD.

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