Table 4

Performance comparison of promoter prediction methods on the human genome

Methods

Specificity

Sensitivity

F-measure


FirstEF

0.415

0.448

0.431

DragonGSF

0.686

0.357

0.470

McPromoter

0.623

0.204

0.307

EP3

0.565

0.413

0.477

Profisi

0.604

0.392

0.475

ARTS

0.672

0.381

0.486

Eponine

0.671

0.367

0.475

ProSom

0.573

0.414

0.481

PNNP

0.593

0.433

0.501

FSPP(ReliefF-300)

0.657

0.528

0.585

FSPP(Wrapper-SVM)

0.662

0.536

0.592


These methods include nine existing promoter prediction methods and our prediction methods based on the filter and wrapper feature selection.

Gan et al. BMC Bioinformatics 2012 13:4   doi:10.1186/1471-2105-13-4

Open Data