Table 3

Categories of initial assemblies
Class code Transcript number Percentage Description
= 26212 76.97% Complete match of intron chain
c 701 2.06% Contained by a reference transcript
j 6207 18.23% At least one splice junction is shared with a reference transcript
i 155 0.46% A transfrag falling entirely within a reference intron
o 187 0.55% Generic exonic overlap with a reference transcript
u 492 1.44% Unknown, intergenic transcript
x 98 0.29% Exonic overlap with reference on the opposite strand
s 1 0.00% An intron of the transfrag overlaps a reference intron on the opposite strand
total 34053 100% Total

Sun et al.

Sun et al. BMC Bioinformatics 2012 13:331   doi:10.1186/1471-2105-13-331

Open Data