|Results of the module search algorithm on the parameter sets found in Table 3|
|Set No.||No. of KEGG||No. of modules||Average No.|
|pathways with||Allb||Significantc||Non-redundantd||of modules|
|modules a||per pathwaye|
The parameter sets 1-5 are listed in Table 3 and described in the Methods section. aThe number of pathways for which significant modules (p-value<0.0001) were found; bThe number of modules found by the enumeration algorithm in the pathways counted in a; cThe number of modules with p-value<0.0001 among the modules in b; dThe number of non-redundant modules among the modules in c. A module is considered to be redundant, if there is another module in the same pathways which is identical to it in gene and miRNA content, except for a variation of up to one gene or one miRNA; eThe average number of non-redundant modules for the pathways in a. Note that set number 1 corresponds to the results of running the algorithm of  on the datasets in this paper.
Veksler-Lublinsky et al.
Veksler-Lublinsky et al. BMC Bioinformatics 2012 13:322 doi:10.1186/1471-2105-13-322