Table 3

Different sets of parameters for the module search algorithm
Set No. Parameters
qh qv qg ϵhm ϵvm ϵgh ϵgv
1 2 2 3 0 0 0 0
2 2 2 3 0.1 0.1 0.1 0.1
3 3 2 4 0.1 0.1 0.1 0.1
4 3 2 4 0.2 0.2 0.1 0.1
5 3 2 5 0.2 0.2 0.1 0.1

The table displays quorum parameters for human and viral miRNAs and human genes (columns 2-4) and ranges of error thresholds (columns 5-8). For error threshold a.bwe executed the enumeration process with error threshold a and if no modules were found, we increased the thresholds one by one, and ran the process again. We stopped raising the error thresholds if the enumeration process resulted with at least one significant module (p-value<0.0001) or when the errors reached the maximal value b.

Veksler-Lublinsky et al.

Veksler-Lublinsky et al. BMC Bioinformatics 2012 13:322   doi:10.1186/1471-2105-13-322

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