Table 7

Results of Mixed Replica search vs. REMC – Mixed MR
Optimized → MixedMR**(int=0.2) MixedMR**(int=0.05)
Algorithm* MixedMR (t) MRmin MR MixedMR (t) MRmin MR
Bulk maize data set (275)
REMC 0.476 23.6s 0.395 0.557 0.582 4.7s 0.534 0.629
MixRep 0.475 23.9s 0.393 0.557 0.582 5.8s 0.534 0.630
Original 0.116 0.440 0.116 0.440
Accession maize data set (521)
REMC 0.608 51.0s 0.526 0.690 0.678 56.0s 0.638 0.717
MixRep 0.618 6.9s 0.555 0.682 0.676 31.5s 0.635 0.717
Original 0.294 0.630 0.294 0.630
Flax data set (708)
REMC 0.422 39.5s 0.337 0.508 0.487 20.3s 0.446 0.529
MixRep 0.440 19.0s 0.378 0.502 0.486 44.5s 0.445 0.527
Original 0.000 0.468 0.000 0.468
Pea data set (1283)
REMC 0.396 02m27s 0.209 0.583 0.510 26.1s 0.397 0.622
MixRep 0.454 02m01s 0.324 0.583 0.520 6.6s 0.429 0.612
Original 0.000 0.509 0.000 0.509
Large pea data set (4429)
REMC 0.278 40m29s 0.000 0.556 0.313 02m03s 0.000 0.626
MixRep 0.405 01h40m 0.230 0.580 0.487 02m48s 0.361 0.612
Original 0.000 0.464 0.000 0.464

*For each combination of algorithm, dataset and evaluation measure, 20 independent runs were performed from which averaged results are reported. By default runs were limited by a runtime of 60 seconds, with some exceptions. For the small pea dataset with an intensity of 20%, a runtime limit of 150 seconds was applied. For the large pea dataset runtime limits were set to 10 minutes for the 5% intensity and 2 hours for the 20% intensity.

**Results shown are those of a pseudo-index containing both minimum and mean MR distance, with equal weight = 0.5.

Components of mixed MR measure.

These results were computed on the helios server.

Beukelaer et al.

Beukelaer et al. BMC Bioinformatics 2012 13:312   doi:10.1186/1471-2105-13-312

Open Data