Table 2

Number of sequences with correct overlap regions

Assember

Correct Assemblies

Percentage of Output


PANDAseq

628 131

96.30

BIPES (Merger)

621 357

94.63

SHERA

637 646

92.35

iTags (PHRAP)

3 578

0.55


Summary of the number of correct overlap sequences in assembled output from sequenced V3-region ampli-cons of Methylococcus capsulatus strain Bath.

The percentage of sequences with error-free overlap regions is shown as a fraction of the total output for each assembler.

Masella et al. BMC Bioinformatics 2012 13:31   doi:10.1186/1471-2105-13-31

Open Data