Table 1

Performance evaluation on the test data set which contains 284 protein coreference links
PRON (R, P, F) DNP (R, P, F) RELAT (R, P, F) ALL (R, P, F)
UU 12.0 79.0 20.8 5.5 66.7 10.1 56.0 71.2 62.7 22.2 73.3 34.1
UZ 17.6 62.9 27.5 4.1 12.5 6.2 46.7 71.4 56.5 21.5 55.5 31.0
CU —– —– —– —– —– —– 64.6 68.0 66.2 19.4 63.2 29.7
UT 12.8 72.7 21.8 1.4 14.3 2.5 29.3 73.3 41.9 14.4 67.2 23.8
RB-MIN 28.0 40.2 33.0 9.6 31.8 14.7 76.0 62.0 68.3 35.6 49.0 41.2
RB-MIN+1, 3 43.2 53.5 47.8 19.2 38.9 25.7 76.0 60.6 67.5 44.7 54.3 49.0
RB-MIN+1, 2, 3 48.0 50.4 49.2 41.1 37.0 39.0 76.0 60.6 67.5 52.5 50.2 51.3

The first four rows show the top performances in BioNLP-ST 2011, row 5, 6 and 7 are our system results with different combination of rules.

Nguyen et al.

Nguyen et al. BMC Bioinformatics 2012 13:304   doi:10.1186/1471-2105-13-304

Open Data