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Oculus: faster sequence alignment by streaming read compression

Brendan A Veeneman12, Matthew K Iyer12 and Arul M Chinnaiyan12345*

Author Affiliations

1 Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA

2 Michigan Center for Translational Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA

3 Department of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA

4 Howard Hughes Medical Institute, University of Michigan Medical School, Ann Arbor, MI, 48109, USA

5 Department of Urology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA

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BMC Bioinformatics 2012, 13:297  doi:10.1186/1471-2105-13-297

Published: 13 November 2012

Additional files

Additional file 1:

Table S1. Oculus performance statistics. Detailed benchmarking data used in generating runtime figures.

Format: XLS Size: 78KB Download file

This file can be viewed with: Microsoft Excel Viewer

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