Table 6

Comparison of the present work with previously published algorithms, Benchmark 3
Algorithm1 1-domain 2-domain 3-domain 4-domain Overall2
SS Algorithm 65% (0.70) 50% (0.39) 38% (0.31) 0% (−0.04) 53%
CA Algorithm 93% (0.87) 76% (0.71) 52% (0.59) 0% (−0.01) 77%
DDomain 94% (0.80) 66% (0.71) 43% (0.56) 33% (0.21) 74%
DomainParser2 96% (0.92) 71% (0.74) 67% (0.67) 67% (0.50) 79%
PDP 89% (0.93) 76% (0.82) 67% (0.71) 100% (0.77) 80%

Present work compared to DDomain [12] (using AUTHORS parameters), DomainParser2 [13] and PDP [11] on the Benchmark 3 data set. Matthews correlation coefficient is given in parentheses. 1CA refers to the α-carbon based algorithm and SS the secondary structure based one. 2Total, regardless of number of domains.

Feldman

Feldman BMC Bioinformatics 2012 13:286   doi:10.1186/1471-2105-13-286

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