Table 4

List of 32 amino acid properties used in the analysis
AAindex accession number (if available) Property Symbol AAindex accession number (if available) Property Symbol
KYTJ820101 Hydropathy h Helical contact area Ca
GRAR740103 Molecular volume Mv ZIMJ680104 Isoelectric point pHi
MANP780101 Surrounding hydrophobicity Hp OOBM770103 Long-range non-bonded energy El
ZIMJ680103 Polarity(Zimmerman) pzim Mean r.m.s. fluctuation displacement F
CHOP780201 Alpha-helical tendencies Pα FASG760101 Molecular weight Mw
GRAR740102 Polarity(Grantham) p Normalized consensus hydrophobicity Hnc
PONP800108 Average number of surrounding residues Ns COHE430101 Partial specific volume V0
Power to be at the C-terminal αc WOEC730101 Polar requirement Pr
GRAR740101 Composition c Power to be at the middle of alpha-helix αm
Compressibility K0 Power to be at the N-terminal αn
FAUJ880113 Equilibrium constant (ionization of COOH) pK MCMT640101 Refractive index μ
CHOP780202 Beta-structure tendencies Pβ OOBM770102 Short and medium range non-bonded energy Esm
ZIMJ680102 Bulkiness Bl PONP800107 Solvent accessible reduction ratio Ra
Buriedness Br Thermodynamic transfer hydrophobicity Ht
Chromatographic index RF OOBM770101 Total non-bonded energy Et
CHAM830101 Coil tendencies Pc CHOP780101 Turn tendencies P

Properties marked by ∗ are from [36].

Datta et al.

Datta et al. BMC Bioinformatics 2012 13:278   doi:10.1186/1471-2105-13-278

Open Data