Table 1

Clustering algorithms used on A. thaliana network
Algorithm Proteins Modules Enriched
Louvain[9] 2369 23 21
CFinder[8] 508 666 180
Clauset[7] 2313 20 18
MCL[5] 844 46 33
MCODE[6] 268 20 16
MCODE.F[6] 1314 20 19
MINE[12] 206 57 29
SPICi[11] 259 46 27

Statistics on clusterings of the largest connected component of the A. thaliana network. All algorithms were run using their default settings. MCODE was run without “haircut” and no “fluff,” MCODE.F included “fluff.” The table reports the number of proteins that were assigned to at least one module, the number of modules after filtering according to procedure used in Vidal et al. [31], and the number of modules FuncAssoc [41] reported as enriched for at least one GO annotation.

Filippova et al.

Filippova et al. BMC Bioinformatics 2012 13:276   doi:10.1186/1471-2105-13-276

Open Data