Table 4

Suggested predictions for experimental validation.
Gene Symbol Chr Str SNP(rs#) Location Posterior SS FDR Group
CCDC148 chr2 + 17492855 158989711 0.999999314 18 0.014 II
    BAT1
chr6 - 3093976 31610839 0.999930191 8 0.12 II
PEBP1 chr12 + 1051470 117067614 0.999873859 14 0.051 II
LOC100130955 chr14 + 11160608 100382845 0.999795515 20 0.023 II
RPL10AP6 chr3 + 584959 61703763 0.999517203 11 0.055 II
KCNJ12 chr17 + 16962951 21259999 0.998953843 11 0.055 II
VARS2 chr6 + 1043483 31001706 0.998607936 14 0.051 II
    BAT2
chr6 - 2272593 31709322 0.998223631 9 0.052 II
RPL10AP6 chr3 + 584959 61703763 0.995668725 9 0.052 I
KDM5B chr1 + 10800864 201003241 0.995398014 9 0.052 I
    TAPBP
chr6 - 1059288 33375649 0.995270134 13 0.057 II
KCNQ5 chr6 - 2000203 73753786 0.993101795 13 0.069 II
FER chr5 + 2009646 108148856 0.989758091 6 0 I
LOC643534 chr5 + 2009646 108148856 0.989758091 6 0 I
LY6G5B chr6 - 1266076 31748496 0.98719144 16 0.028 II
NOMO2 chr16 + 7179 14897344 0.979473344 7 0 II
BAT5 chr6 - 1475865 31765391 0.979015507 7 0 II
RXRB chr6 - 6531 33271428 0.977747582 6 0 II
FER chr5 + 2009646 108148856 0.962143895 6 0 II
    ZBTB22
Chr6 - 1061783 33390605 0.96804794 12 0.076 II
LOC283398 chr12 - 3827521 93467186 0.908227908 7 0 I
UCRC chr22 + 14115 28493525 0.889141351 15 0.039 II
MT2A chr16 + 10636 55200843 0.709333922 10 0.142 II
RQCD1 chr2 + 526897 219141840 0.683651187 13 0.128 II
PSMC3IP chr17 - 6963 37985122 0.661403579 12 0.146 II
CSTF3 chr11 - 1028564 33118584 0.479199531 8 0.373 II
LOC100128252 chr19 + 3971706 61697880 0.478128233 4 0.343 I
LOC100130814 chr14 - 2295655 100608883 0.446498085 18 0.228 II
IMPDH1 chr7 - 2228075 127821864 0.283348511 17 0.318 II
    CLDN4
chr7 + 1127155 72884396 0.270700082 4 0.594 I

Boldface indicates proximity to known imprinted genes. Underline indicates a gene has multiple (≥3) SNPs with posteriors > 0.2. Genes are sorted by their posteriors. RPL10AP6 and FER are listed for both Group I and Group II. Abbreviations are the same as in Table 2.

Li et al.

Li et al. BMC Bioinformatics 2012 13:271   doi:10.1186/1471-2105-13-271

Open Data