Table 1

Yeast interactome maps used in this study for method evaluation
network property Tarassov-all Tarassov-hq Yu-Ito-Uetz Collins CPDB-yeast Costanzo
references [12] [12] [9] [49] [51] [52]
method PCA PCA Y2H AP-MS multiple genetic
node count 2238 (2293) 889 (1124) 1647 (2018) 1002 (1620) 6073 (6075) 4278 (4278)
link count 9360 (9646) 2407 (2770) 2518 (2930) 8313 (9064) 74332 (74333) 63927 (63927)
clustering 0.14 0.24 0.08 0.72 0.19 0.06
coefficient
links in 5861 (62%) 1761 (73%) 440 (17%) 8129 (97%) 63385 (85%) 47822 (74%)
triangles
mean shortest 3.7 5.6 5.6 5.5 2.7 2.9
path length
links with ≥ 3 546 (5%) 419 (17%) 598 (23%) 1635 (19%) 6324 (8%) 2546 (3%)
publications

Kamburov et al.

Kamburov et al. BMC Bioinformatics 2012 13:262   doi:10.1186/1471-2105-13-262

Open Data