Table 1

HOMSTRAD multiple alignments (all values are averages)
Core length RMSD Seq Str Cons Partial length Partial Seq % Correct
HOMSTRAD 126.8 2.71 1.37 1.82 1.60 136.2 2.13 (100%)
Mustang 152.8 3.60 1.54 1.86 1.70 165.3 2.26 79.3%
Matt 178.4 1.72 1.54 1.55 1.55 189.0 2.34 73.4%
SAlign 172.6 2.29 1.79 2.86 2.32 190.8 2.45 78.1%
(Promals3D) 186.8 - 1.55 - - 198.6 2.08 43%
Formatt (mafft) 148.2 1.46 1.36 1.35 1.35 155.6 2.18 78.7%
Formatt (clustalw) 169.3 1.72 1.47 1.55 1.51 182.0 2.11 72.9%
Formatt (muscle) 169.6 1.72 1.48 1.55 1.51 179.1 2.15 72.4%
Formatt (probcons) 168.9 1.73 1.50 1.55 1.53 178.8 2.18 73.6%

Daniels et al.

Daniels et al. BMC Bioinformatics 2012 13:259   doi:10.1186/1471-2105-13-259

Open Data