Figure 1.

Formatt frame-offset repair example. Example of Formatt’s frame-offset repair on a subset (residues 37-50 of chain A of PDB ID 1c9f, and residues 64-76 of chain A of PDB ID 1d4b) of the HOMSTRAD “CIDE-N” group. In both sequence and structural alignments, difference between Matt and Formatt are shown in orange and green; red and blue regions are αand βstructures aligned identically by Matt and Formatt. Note that the Formatt alignment has fewer non-core residues (three) than Matt (five).

Daniels et al. BMC Bioinformatics 2012 13:259   doi:10.1186/1471-2105-13-259
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