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Open Access Software

Coalescent: an open-source and scalable framework for exact calculations in coalescent theory

Susanta Tewari* and John L Spouge

Author Affiliations

National Center for Biotechnology Information, Bethesda, MD, 20894, USA

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BMC Bioinformatics 2012, 13:257  doi:10.1186/1471-2105-13-257

Published: 3 October 2012

Additional files

Additional file 1: (End user application):

Description of Data: Unzip the file and go to the bin subdirectory. For windows run (double-click) the file coalescent.exe and for Mac/Linux run the file coalescent from the console. Running some jobs require infinite-sites data which is available as It contains the sample infinite-sites data files stored in xml format. A video tutorial on installation is available at webcite and another on the application demo is available at webcite.

Format: ZIP Size: 14MB Download file

Open Data

Additional file 2: (Sample infinite-sites data):

Description of data: Contains infinite-sites data stored in xml format. These files can be used while running jobs in the coalescent application.

Format: ZIP Size: 3KB Download file

Open Data