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Open Access Research article

ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins

Sébastien Tempel1, Nicolas Pollet2 and Fariza Tahi1*

Author Affiliations

1 Laboratoire IBISC-IBGBI EA 4526, Université d’Evry-Val d’Essonne, 91034 EVRY, Genopole, 23 Bd de France, France

2 Metamorphosys iSSB, CNRS, Université d’Evry-Val d’Essonne, 91058 Evry, Genopole, Genavenir 3 - Genopole campus 1, 1 rue Pierre Fontaine, France

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BMC Bioinformatics 2012, 13:246  doi:10.1186/1471-2105-13-246

Published: 25 September 2012

Additional files

Additional file 1:

Screenshot of dual annotation in Genome Broswer. HSA-MIR-1255a is a microRNA gene present at the position 102251459 to 102251571 on chromosome 4 [24]. This locus corresponds also to the transposable element Tigger1.

Format: PNG Size: 393KB Download file

Open Data

Additional file 2:

Table of miRBase pre-miRNAs from six genomes. Analysis results of frog, human, mouse, nematode, sea squirt and rat pre-miRNAs from miRBase v.17.

Format: XLS Size: 776KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data