Table 4

Numbers of annotated genes requiring frameshift corrections or manual attention in S. cerevisiae and N. castellii
S. cerevisiae N. castellii
YGAP output Confirmeda YGAP output Confirmed
Automatically correctedb - - 97 86
Unable to correctc 93 3 76 33
Tagged for manual inspectiond 390 155 465 216

a Confirmed by comparison to the curated annotations of S. cerevisiae and N. castellii.

b Frameshifts corrected using the reads file.

c Either because the reads were not helpful or there were no frameshift (e.g. genes in which natural ribosomal frameshifting occurs).

d These potential genes may contain undetected introns, untranslatable sequences due to inaccurate prediction of exon locations, or may begin or end in undefined (N) nucleotides.

Proux-Wéra et al.

Proux-Wéra et al. BMC Bioinformatics 2012 13:237   doi:10.1186/1471-2105-13-237

Open Data