Table 3

Comparison of automatic annotations of the Naumovozyma castellii genome by YGAP and AUGUSTUS, to the reference (Scas) annotation
Scaffold Same Coordinates False Negatives Overlap False Positives Wrong Start or Stop coordinate
YGAP AUGUSTUS YGAP AUGUSTUS YGAP AUGUSTUS YGAP AUGUSTUS YGAP AUGUSTUS
scf7180000013410 (chr. 1) 1427 1289 12 34 31 5 19 46 56 198
scf7180000013411 (chr. 2) 851 764 8 28 12 5 13 19 35 106
scf7180000013405 (chr. 3) 544 485 3 17 13 2 14 25 28 84
scf7180000013408 (chr. 4) 462 418 1 10 9 1 3 9 16 59
scf7180000013414 (chr. 5) 386 338 3 16 13 8 6 18 11 50
scf7180000013415b (chr. 6) 374 336 3 7 6 1 10 15 17 56
scf7180000013412 (chr. 7) 387 342 3 16 8 1 11 25 18 57
scf7180000013409 (chr. 8) 331 294 1 8 11 11 6 9 15 44
scf7180000013415a (chr. 9) 290 250 4 12 1 3 3 8 17 47
scf7180000013407 (chr. 10) 208 185 2 5 5 1 5 8 10 34
Total 5260 4701 40 153 109 38 90 182 223 735

Columns show the numbers of genes in each category, when compared to genes in the reference (Scas) manual annotation of N. castellii genes.

Proux-Wéra et al.

Proux-Wéra et al. BMC Bioinformatics 2012 13:237   doi:10.1186/1471-2105-13-237

Open Data