Table 1

Comparison of automatic reannotations of the Saccharomyces cerevisiae genome by YGAP and AUGUSTUS, to the reference annotation
Chromosome Same Coordinates False Negatives Overlap False Positives Wrong Start or Stop coordinate
YGAP AUGUSTUS YGAP AUGUSTUS YGAP AUGUSTUS YGAP AUGUSTUS YGAP AUGUSTUS
Chr_1 75 76 7 5 1 1 2 3 8 9
Chr_2 354 346 3 13 2 2 5 6 28 26
Chr_3 135 126 1 9 6 0 6 4 9 16
Chr_4 668 646 8 24 2 1 15 16 47 54
Chr_5 236 232 1 6 7 0 6 10 18 24
Chr_6 101 106 2 8 1 1 8 5 14 3
Chr_7 457 446 1 9 6 1 7 14 37 45
Chr_8 237 235 2 7 2 1 9 8 22 20
Chr_9 180 176 0 7 5 1 4 4 20 21
Chr_10 312 300 0 9 4 0 6 5 25 32
Chr_11 284 275 1 9 5 0 1 0 18 24
Chr_12 445 414 3 14 5 2 10 10 24 48
Chr_13 405 387 2 10 7 0 5 9 22 39
Chr_14 353 337 0 11 4 3 3 4 25 31
Chr_15 465 451 3 14 4 0 5 12 34 42
Chr_16 412 385 10 17 4 0 7 7 25 49
Total 5119 4938 44 172 65 13 99 117 376 483

Columns show the numbers of genes in each category, when compared to genes in the reference YGOB annotation of the S. cerevisiae genome (which is based on Saccharomyces Genome Database annotation).

Proux-Wéra et al.

Proux-Wéra et al. BMC Bioinformatics 2012 13:237   doi:10.1186/1471-2105-13-237

Open Data