Table 3

Comparison of three CNV analyses in the bipolar disorder study
Method #Detected CNVR #Overlap %Overlap Time (min.)
PennCNV 189 63 33.33% 3.44
GFL-Individual (LRR+BAF) 95 50 52.63% 3.90
GFL-Pedigree (LRR) 106 62 58.49% 1.57

The number and overlap of CNP regions with frequency ≥0.1 detected in our sample by different methods. These CNP regions were compiled from HapMap. Computation time is given in minutes per sample.

Zhang et al.

Zhang et al. BMC Bioinformatics 2012 13:205   doi:10.1186/1471-2105-13-205

Open Data