Table 4

Pathway analysis performed using topologyGSA statistical test on graphite networks.

Name

FDR

Database

BCR

ABL


1

CDO in myogenesis

0.00

Reactome

2

Regulation of cytoskeletal remodeling and cell spreading by IPP complex components

0.00

Reactome

3

Role of Abl in Robo-Slit signaling

0.00

Reactome

4

NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10

0.01

Reactome

5

TNF signaling

0.01

Reactome

6

G1 Phase

0.02

Reactome

7

mTOR signalling

0.02

Reactome

8

PI3K Cascade

0.02

Reactome

9

Cyclin D associated events in G1

0.02

Reactome

10

PI-3K cascade

0.03

Reactome

11

E2F mediated regulation of DNA replication

0.04

Reactome

12

Cyclin A/B1 associated events during G2/M transition

0.04

Reactome

13

Intrinsic Pathway for Apoptosis

0.04

Reactome

14

Extrinsic Pathway for Apoptosis

0.05

Reactome

15

Lissencephaly gene (LIS1) in neuronal migration and development

0.00

NCI

16

ErbB4 signaling events

0.01

NCI

17

Regulation of retinoblastoma protein

0.00

NCI

18

Canonical NF-kappaB pathway

0.01

NCI

19

p73 transcription factor network

0.01

NCI

20

Atypical NF-kappaB pathway

0.02

NCI

21

Neurotrophic factor-mediated Trk receptor signaling

0.00

NCI

22

Pathogenic Escherichia coli infection

0.00

KEGG

23

Chronic myeloid leukeamia

0.00

KEGG

24

Cell cycle

0.0

KEGG

25

Axon guidance

0.00

KEGG

26

Neurotrophin signaling pathway

0.00

KEGG

27

mtor signaling pathway

0.01

Biocarta

28

nf-kb signaling pathway

0.01

Biocarta

29

tnf/stress related signaling

0.02

Biocarta

30

p53 signaling pathway

0.03

Biocarta

31

tnfr1 signaling pathway

0.02

Biocarta

32

integrin signaling pathway

0.02

Biocarta

33

erk and pi-3 kinase are necessary for collagen binding in corneal epithelia

0.02

Biocarta

34

rb tumor suppressor/checkpoint signaling in response to dna damage

0.03

Biocarta

35

egf signaling pathway

0.04

Biocarta

36

tgf beta signaling pathway

0.04

Biocarta

37

role of mitochondria in apoptotic signaling

0.04

Biocarta

38

inhibition of cellular proliferation by gleevec

0.04

Biocarta

39

atm signaling pathway

0.05

Biocarta

40

influence of ras and rho proteins on g1 to s transition

0.05

Biocarta


Sales et al. BMC Bioinformatics 2012 13:20   doi:10.1186/1471-2105-13-20

Open Data