Normalization of ChIP-seq data with control
1 Department of Statistics and Actuarial Science, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
2 Department of Statistics, University of Wisconsin-Madison, Madison, WI 53706, USA
3 Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53706, USA
BMC Bioinformatics 2012, 13:199 doi:10.1186/1471-2105-13-199Published: 10 August 2012
Additional file 1:
Section 1. Illustration of linearity between ChIP and control samples. Section 2. Simulation results for the normalization factor estimators at different settings with yeast data. Section 3. Simulation results for the normalization factor estimators with C.elegans data. Section 4. FDR control for unbalanced data, .
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Additional file 2:
NCIS R Package.
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