Additional file 8.

Recall rates by method, contamination, and alteration length. (A) Recall rates (y-axis) of each of the assessed methods, calculated by contamination over each of the 3 hybrid sample sets. Colour code: GAP (orange), updated GAP (golden), ASCAT (purple), GPHMM (black), OncoSNP (blue), GenoCNA (green), MixHMM (grey). (B) Recall rates (y-axis) of each of the assessed methods, calculated by contamination and alteration length over each of the 3 hybrid sample sets. Alteration lengths (y-axis) are grouped into increasingly bigger bins (10–19 SNPs, 20–39, 40–79, 80–159, 160–319, 320–639, 640–1279 and from 1280 SNPs on) and each bin is represented by the shorter length within it. Alterations shorter than 10 SNPs were not assessed. Colour code: GAP (orange), updated GAP (golden), ASCAT (purple), GPHMM (black), OncoSNP (blue), GenoCNA (green), MixHMM (grey).

Format: PDF Size: 100KB Download file

This file can be viewed with: Adobe Acrobat Reader

Mosén-Ansorena et al. BMC Bioinformatics 2012 13:192   doi:10.1186/1471-2105-13-192