Table 2

Declustering Details
Network Declustering Constant (Iterations) Nodes Before Nodes After Edges Before Edges After
CMAP co-expression 2,000 8,924 8,924 119,420 61,362
Transcription Factors (ChIP-X) 1,500 13,223 13,223 110,901 70,347
GeneRIFs 2,000 3,777 3,777 52,512 27,487
GO Molecular Function 3,000 2,969 2,944 81,895 23,356
MicroRNA 3,000 6,590 6,590 176,766 46,161
Mouse Phenotype 3,300 7,795 7,553 290,381 52,637
Metabolites 3,500 3,692 3,577 205,468 28,617
Structural Domains 3,500 7,115 6,746 247,885 46,463
GO Biological Process 2,300 4,305 4,287 65,669 29,988

Declustering constants and node and edge counts before and after the declustering algorithm was applied on nine FANs.

Dannenfelser et al.

Dannenfelser et al. BMC Bioinformatics 2012 13:156   doi:10.1186/1471-2105-13-156

Open Data