Table 1

Cancer Gene Enrichment rate of various breast cancer gene signatures

CMI-COMBINER

CORG-COMBINER

Subnetwork

G70

G76


NetPath

54.17%*

50.41%*

26.33%*

10.00%

10.53%

Atlas

60.42%*

46.34%

32.87%

15.71%

18.42%

Census

11.46%*

13.82%*

5.42%*

2.86%

0.00%

CANgene

1.04%

1.63%

0.52%

0.00%

0.00%

G2SBC

43.75%*

46.34%*

19.02%

21.43%

10.53%

COSMIC

16.67%

17.89%*

7.06%

4.29%

1.32%

KEGG

35.42%*

29.27%*

9.90%*

8.57%

1.32%


* p-value < 0.05 for hypergeometric tests

Yang et al. BMC Bioinformatics 2012 13:12   doi:10.1186/1471-2105-13-12

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